PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G32110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB
Protein Properties Length: 442aa    MW: 47650.2 Da    PI: 6.8223
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G32110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-17106151147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W+ +Ed ll ++v++lG+++W++Iar ++ gR++k+c++rw + 
  LPERR01G32110.1 106 KGPWSFDEDALLSNLVEKLGPRNWTLIARGIP-GRSGKSCRLRWCNQ 151
                      79******************************.***********985 PP

2Myb_DNA-binding50.93.5e-16158202147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T+eEd ++  a++ +G++ W+ Ia+ +  gRt++ +k++w++ 
  LPERR01G32110.1 158 RKPFTEEEDRIIMAAHEVHGNK-WAVIAKLLV-GRTDNAIKNHWNST 202
                      789*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.492101152IPR017930Myb domain
SuperFamilySSF466897.11E-30104199IPR009057Homeodomain-like
SMARTSM007175.9E-15105154IPR001005SANT/Myb domain
PfamPF002491.5E-16106151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-24107159IPR009057Homeodomain-like
CDDcd001674.99E-14108150No hitNo description
PROSITE profilePS5129425.723153207IPR017930Myb domain
SMARTSM007172.0E-15157205IPR001005SANT/Myb domain
PfamPF002493.9E-14158202IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-23160206IPR009057Homeodomain-like
CDDcd001671.49E-11160203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MSSETAASPP PPNPPAAGSS HSSPASMTDD THGGGAHPEP QSHRSSSSSS SPPPAAAGGE  60
TQVQTQPHHP SPPPSGEEDD EVFITGQIAV GEAAGAAAAA TEERVKGPWS FDEDALLSNL  120
VEKLGPRNWT LIARGIPGRS GKSCRLRWCN QLDPQVKRKP FTEEEDRIIM AAHEVHGNKW  180
AVIAKLLVGR TDNAIKNHWN STLRRRHCTG GRCAQGGVVA RAIPEKPRSV SEEPWPLGSH  240
SSLYVREAME APAQAVSESY VGAWQVRDQN CKTEVAYPPY LARPVAKVGA FKPYNIGHAQ  300
SSQKEMLSFA AKFGSNLQPF KPENEVCKFV DPTSFAAEVP NKCGHGCCSS HGQLHKNSLL  360
GPEFNDFEDH PPISNSSFAS LVSEISSIAW MKSGLLSSDT SAQYSVLTEV KHGEFYLAHR  420
TSLPLNRIAE NLQGNLIIEL HF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-391052066107B-MYB
1gv2_A2e-391032061104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085820.0AK108582.1 Oryza sativa Japonica Group cDNA clone:002-146-A03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630688.10.0PREDICTED: transcription factor RAX1
TrEMBLA0A0D9V7U20.0A0A0D9V7U2_9ORYZ; Uncharacterized protein
STRINGLOC_Os01g63160.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-81myb domain protein 109